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1

A Continuous STAPLE for Scalar, Vector, and Tensor Images: An Application to DTI Analysis

Commowick, O., Warfield, S.K.

Journal:

IEEE Transactions on Medical Imaging

Year:

2009

Language:

english

File:

PDF, 1.57 MB

english, 2009

2

Diffusion Features of White Matter in Tuberous Sclerosis With Tractography

Michelle L. Krishnan, Olivier Commowick, Shafali S. Jeste, Neil Weisenfeld, Arne Hans, Matthew C. Gregas, Mustafa Sahin, Simon K. Warfield

Journal:

Pediatric Neurology

Year:

2010

Language:

english

File:

PDF, 609 KB

english, 2010

3

Atlas-based automatic segmentation of MR images: Validation study on the brainstem in radiotherapy context

Pierre-Yves Bondiau, Grégoire Malandain, Stéphane Chanalet, Pierre-Yves Marcy, Jean-Louis Habrand, François Fauchon, Philippe Paquis, Adel Courdi, Olivier Commowick, Isabelle Rutten, Nicholas Ayache

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2005

Language:

english

File:

PDF, 547 KB

english, 2005

4

2779

Isambert, A., Dhermain, F., Bidault, F., Bonniaud, G., Lery, R., Malandain, G., Commowick, O., Diaz, J., Bourhis, J., Lefkopoulos, D.

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2006

Language:

english

File:

PDF, 100 KB

english, 2006

5

An efficient locally affine framework for the smooth registration of anatomical structures

O. Commowick, V. Arsigny, A. Isambert, J. Costa, F. Dhermain, F. Bidault, P.-Y. Bondiau, N. Ayache, G. Malandain

Journal:

Medical Image Analysis

Year:

2008

Language:

english

File:

PDF, 2.00 MB

english, 2008

6

A Fast and Log-Euclidean Polyaffine Framework for Locally Linear Registration

Vincent Arsigny, Olivier Commowick, Nicholas Ayache, Xavier Pennec

Journal:

Journal of Mathematical Imaging and Vision

Year:

2009

Language:

english

File:

PDF, 1.56 MB

english, 2009

7

Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance From STAPLE

Commowick, O., Warfield, S.K.

Journal:

IEEE Transactions on Medical Imaging

Year:

2010

Language:

english

File:

PDF, 872 KB

english, 2010

8

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge

Murphy, K., van Ginneken, B., Reinhardt, J.M., Kabus, S., Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Christensen, G.E., Garcia, V., Vercauteren, T., Ayache, N., Commowick, O., Malandain, G., Glocke

Journal:

IEEE Transactions on Medical Imaging

Year:

2011

Language:

english

File:

PDF, 1.80 MB

english, 2011

9

Outils de contourage, utilisation et construction d’atlas anatomiques : exemples des cancers de la tête et du cou

L. Ramus, J. Thariat, P.-Y. Marcy, Y. Pointreau, G. Bera, O. Commowick, G. Malandain

Journal:

Cancer/Radiothérapie

Year:

2010

Language:

french

File:

PDF, 482 KB

french, 2010

10

Estimating A Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE

Commowick, O., Akhondi-Asl, A., Warfield, S. K.

Journal:

IEEE Transactions on Medical Imaging

Year:

2012

Language:

english

File:

PDF, 2.41 MB

english, 2012

11

Atlas-based delineation of lymph node levels in head and neck computed tomography images

Olivier Commowick, Vincent Grégoire, Grégoire Malandain

Journal:

Radiotherapy and Oncology

Year:

2008

Language:

english

File:

PDF, 900 KB

english, 2008

12

Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context

Aurélie Isambert, Frédéric Dhermain, François Bidault, Olivier Commowick, Pierre-Yves Bondiau, Grégoire Malandain, Dimitri Lefkopoulos

Journal:

Radiotherapy and Oncology

Year:

2008

Language:

english

File:

PDF, 307 KB

english, 2008

13

A pre-clinical assessment of an atlas-based automatic segmentation tool for the head and neck

Richard Sims, Aurelie Isambert, Vincent Grégoire, François Bidault, Lydia Fresco, John Sage, John Mills, Jean Bourhis, Dimitri Lefkopoulos, Olivier Commowick, Mehdi Benkebil, Grégoire Malandain

Journal:

Radiotherapy and Oncology

Year:

2009

Language:

english

File:

PDF, 412 KB

english, 2009

14

Automated delineation of white matter fiber tracts with a multiple region-of-interest approach

Ralph O. Suarez, Olivier Commowick, Sanjay P. Prabhu, Simon K. Warfield

Journal:

Year:

2012

Language:

english

File:

PDF, 1.35 MB

english, 2012

15

[IEEE 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI 2013) - San Francisco, CA, USA (2013.04.7-2013.04.11)] 2013 IEEE 10th International Symposium on Biomedical Imaging - Semi-automatic classification of lesion patterns in patients with clinically isolated syndrome

Crimi, A., Commowick, O., Ferre, J.C., Maarouf, A., Edan, G., Barillot, C.

Year:

2013

Language:

english

File:

PDF, 680 KB

english, 2013

16

ATLAS-BASED SEGMENTATION FOR RADIOTHERAPY PLANNING

Malandain, G., Commowick, O., Ramus, L.

Journal:

Radiotherapy and Oncology

Year:

2009

Language:

english

File:

PDF, 118 KB

english, 2009

17

A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure

Taquet, Maxime, Scherrer, Benoit, Commowick, Olivier, Peters, Jurriaan M., Sahin, Mustafa, Macq, Benoit, Warfield, Simon K.

Journal:

IEEE Transactions on Medical Imaging

Year:

2014

Language:

english

File:

PDF, 2.65 MB

english, 2014

18

[IEEE 2012 IEEE 9th International Symposium on Biomedical Imaging (ISBI 2012) - Barcelona, Spain (2012.05.2-2012.05.5)] 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI) - Block-matching strategies for rigid registration of multimodal medical images

Commowick, Olivier, Wiest-Daessle, Nicolas, Prima, Sylvain

Year:

2012

Language:

english

File:

PDF, 240 KB

english, 2012

19

[IEEE 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI 2014) - Beijing, China (2014.4.29-2014.5.2)] 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) - Fast identification of optimal fascicle configurations from standard clinical diffusion MRI using Akaike information criterion

Stamm, Aymeric, Commowick, Olivier, Perez, Patrick, Barillot, Christian

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

20

[IEEE 2011 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011) - Chicago, IL, USA (2011.03.30-2011.04.2)] 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Automated detection of white matter fiber bundles

Suarez, Ralph O., Commowick, Olivier, Tomas-Fernandez, Xavier, Prabhu, Sanjay, Warfield, Simon K.

Year:

2011

Language:

english

File:

PDF, 1.35 MB

english, 2011

21

[IEEE 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006. - Arlington, Virginia, USA (April 6, 2006)] 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006. - An Efficient Locally Affine Framework for the Registration of Anatomical Structures

Commowick, O., Arsigny, V., Costa, J., Ayache, N., Malandain, G.

Year:

2006

Language:

english

File:

PDF, 343 KB

english, 2006

22

[IEEE 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI 2014) - Beijing, China (2014.4.29-2014.5.2)] 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) - Quantitative relaxation templates for the human brain at 3T

Cao, Fang, Commowick, Olivier, Maumet, Camille, Barillot, Christian

Year:

2014

Language:

english

File:

PDF, 2.39 MB

english, 2014

23

[IEEE 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI 2013) - San Francisco, CA, USA (2013.04.7-2013.04.11)] 2013 IEEE 10th International Symposium on Biomedical Imaging - Using bilateral symmetry to improve non-local means denoising of MR brain images

Prima, Sylvain, Commowick, Olivier

Year:

2013

Language:

english

File:

PDF, 2.94 MB

english, 2013

24

Diffusion MRI abnormalities detection with orientation distribution functions: A multiple sclerosis longitudinal study

Commowick, Olivier, Maarouf, Adil, Ferré, Jean-Christophe, Ranjeva, Jean-Philippe, Edan, Gilles, Barillot, Christian

Journal:

Medical Image Analysis

Year:

2015

Language:

english

File:

PDF, 9.51 MB

english, 2015

25

[IEEE 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI 2015) - Brooklyn, NY, USA (2015.4.16-2015.4.19)] 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) - Probabilistic one class learning for automatic detection of multiple sclerosis lesions

Karpate, Yogesh, Commowick, Olivier, Barillot, Christian

Year:

2015

Language:

english

File:

PDF, 857 KB

english, 2015

26

SPIE Proceedings [SPIE SPIE Medical Imaging - Orlando, Florida, United States (Saturday 21 February 2015)] Medical Imaging 2015: Image Processing - Robust detection of multiple sclerosis lesions from intensity-normalized multi-channel MRI

Ourselin, Sébastien, Styner, Martin A., Karpate, Yogesh, Commowick, Olivier, Barillot, Christian

Year:

2015

Language:

english

File:

PDF, 316 KB

english, 2015

27

[IEEE 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI 2015) - Brooklyn, NY, USA (2015.4.16-2015.4.19)] 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) - Symmetric block-matching registration for the distortion correction of Echo-Planar images

Hedouin, Renaud, Commowick, Olivier, Taquet, Maxime, Bannier, Elise, Scherrer, Benoit, Warfield, Simon K., Barillot, Christian

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

28

SPIE Proceedings [SPIE SPIE Medical Imaging - Lake Buena Vista (Orlando Area), Florida, USA (Saturday 9 February 2013)] Medical Imaging 2013: Image Processing - Multiple sclerosis lesions evolution in patients with clinically isolated syndrome

Crimi, A., Commowick, O., Ferre, J. C., Maarouf, A., Edan, G., Barillot, C., Ourselin, Sebastien, Haynor, David R.

Year:

2013

Language:

english

File:

PDF, 492 KB

english, 2013

29

Imaging biomarkers in Multiple Sclerosis: from image analysis to population imaging

Barillot, Christian, Edan, Gilles, Commowick, Olivier

Journal:

Medical Image Analysis

Year:

2016

Language:

english

File:

PDF, 878 KB

english, 2016

30

Voxel-Based Quantitative Analysis of Brain Images From 18F-FDG PET With a Block-Matching Algorithm for Spatial Normalization

Person, Christophe, Louis-Dorr, Valérie, Poussier, Sylvain, Commowick, Olivier, Malandain, Grégoire, Maillard, Louis, Wolf, Didier, Gillet, Nicolas, Roch, Véronique, Karcher, Gilles, Marie, Pierre-Yve

Journal:

Clinical Nuclear Medicine

Year:

2012

Language:

english

File:

PDF, 1.46 MB

english, 2012

31

The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery

Pujol, Sonia, Wells, William, Pierpaoli, Carlo, Brun, Caroline, Gee, James, Cheng, Guang, Vemuri, Baba, Commowick, Olivier, Prima, Sylvain, Stamm, Aymeric, Goubran, Maged, Khan, Ali, Peters, Terry, Ne

Journal:

Journal of Neuroimaging

Year:

2015

Language:

english

File:

PDF, 849 KB

english, 2015

32

SPIE Proceedings [SPIE SPIE Medical Imaging - Lake Buena Vista (Orlando Area), Florida, USA (Saturday 9 February 2013)] Medical Imaging 2013: Image Processing - Multimodal rigid-body registration of 3D brain images using bilateral symmetry

Prima, Sylvain, Commowick, Olivier, Ourselin, Sebastien, Haynor, David R.

Year:

2013

Language:

english

File:

PDF, 612 KB

english, 2013

33

Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions

Hedouin, Renaud, Commowick, Olivier, Bannier, Elise, Scherrer, Benoit, Taquet, Maxime, Warfield, Simon, Barillot, Christian

Journal:

IEEE Transactions on Medical Imaging

Year:

2017

Language:

english

File:

PDF, 3.86 MB

english, 2017

34

USPIO-positive MS lesions are associated with greater tissue damage than gadolinium-positive-only lesions during 3-year follow-up

Kerbrat, Anne, Combès, Benoit, Commowick, Olivier, Maarouf, Adil, Bannier, Elise, Ferré, Jean Christophe, Tourbah, Ayman, Ranjeva, Jean-Philippe, Barillot, Christian, Edan, Gilles

Journal:

Multiple Sclerosis Journal

Year:

2017

Language:

english

File:

PDF, 729 KB

english, 2017

35

Measurement of pediatric regional cerebral blood flow from 6 months to 15 years of age in a clinical population

Carsin-Vu, Aline, Corouge, Isabelle, Commowick, Olivier, Bouzillé, Guillaume, Barillot, Christian, Ferré, Jean-Christophe, Proisy, Maia

Journal:

European Journal of Radiology

Year:

2018

Language:

english

File:

PDF, 429 KB

english, 2018

36

[IEEE 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018) - Washington, DC, USA (2018.4.4-2018.4.7)] 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018) - Multi-compartment model of brain tissues from T2 relaxometry MRI using gamma distribution

Chatterjee, Sudhanya, Commowick, Olivier, Afacan, Onur, Warfield, Simon K., Barillot, Christian

Year:

2018

Language:

english

File:

PDF, 521 KB

english, 2018

37

Predictive Value of Imaging Markers at Multiple Sclerosis Disease Onset Based on Gadolinium- and USPIO-Enhanced MRI and Machine Learning

Crimi, Alessandro, Commowick, Olivier, Maarouf, Adil, Ferré, Jean-Christophe, Bannier, Elise, Tourbah, Ayman, Berry, Isabelle, Ranjeva, Jean-Philippe, Edan, Gilles, Barillot, Christian, Wang, Yi

Journal:

Year:

2014

Language:

english

File:

PDF, 777 KB

english, 2014

38

Shanoir: Applying the Software as a Service Distribution Model to Manage Brain Imaging Research Repositories

Barillot, Christian, Bannier, Elise, Commowick, Olivier, Corouge, Isabelle, Baire, Anthony, Fakhfakh, Ines, Guillaumont, Justine, Yao, Yao, Kain, Michael

Journal:

Frontiers in ICT

Year:

2016

Language:

english

File:

PDF, 5.07 MB

english, 2016

39

Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure

Commowick, Olivier, Istace, Audrey, Kain, Michaël, Laurent, Baptiste, Leray, Florent, Simon, Mathieu, Pop, Sorina Camarasu, Girard, Pascal, Améli, Roxana, Ferré, Jean-Christophe, Kerbrat, Anne, Tourdi

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 4.38 MB

english, 2018

40

White matter abnormalities in depression: A categorical and phenotypic diffusion MRI study

Coloigner, Julie, Batail, Jean-Marie, Commowick, Olivier, Corouge, Isabelle, Robert, Gabriel, Barillot, Christian, Drapier, Dominique

Journal:

NeuroImage: Clinical

Year:

2019

Language:

english

File:

PDF, 1.90 MB

english, 2019

41

[IEEE 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI) - Venice, Italy (2019.4.8-2019.4.11)] 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019) - Geometric Evaluation of Distortion Correction Methods in Diffusion MRI of the Spinal Cord

Snoussi, Haykel, Caruyer, Emmanuel, Cohen-Adad, Julien, Commowick, Olivier, Combes, Benoit, Bannier, Elise, Kerbrat, Anne, Barillot, Christian

Year:

2019

Language:

english

File:

PDF, 225 KB

english, 2019

42

Regional brain development analysis through registration using anisotropic similarity, a constrained affine transformation

Legouhy, Antoine, Commowick, Olivier, Proisy, MaÃ¯a, Rousseau, FranÃ§ois, Barillot, Christian, Pham, Dzung

Journal:

Year:

2020

File:

PDF, 12.25 MB

2020

43

[IEEE 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI) - Venice, Italy (2019.4.8-2019.4.11)] 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019) - Unbiased Longitudinal Brain Atlas Creation Using Robust Linear Registration And Log-Euclidean Framework For Diffeomorphisms

Legouhy, Antoine, Commowick, Olivier, Rousseau, Francois, Barillot, Christian

Year:

2019

File:

PDF, 605 KB

2019

44

Unsupervised Domain Adaptation With Optimal Transport in Multi-Site Segmentation of Multiple Sclerosis Lesions From MRI Data

Ackaouy, Antoine, Courty, Nicolas, VallÃ©e, Emmanuel, Commowick, Olivier, Barillot, Christian, Galassi, Francesca

Journal:

Frontiers in Computational Neuroscience

Year:

2020

Language:

english

File:

PDF, 1.83 MB

english, 2020

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